1 ABCD Data

The Adolescent Brain Cognitive Development (ABCD) Study is the largest long-term study of brain development and child health in the United States. This study explores how childhood experiences (such as sports, videogames, social media, unhealthy sleep patterns, and smoking) interact with each other and with a child’s changing biology to affect brain development and social, behavioral, academic, health, and other outcomes. The ABCD study follows a cohort of over 10,000 children from pre-adolescence into adulthood.

2 Data Security Protocols

All members using data from the ABCD study must abide by the following security protocols to ensure data security and participant confidentiality. 1. Only individuals approved by Dr. Petersen and who are added to the Data Use Certificate are allowed access to this data. 1. Members accessing this data MUST use the University of Iowa Research Remote Desktop Service (RRDS) when viewing or working with any data from the ABCD Study. Further, this must be done on a University of Iowa computer, unless given direct permission by Dr. Petersen. 1. Data CANNOT be moved from the LSS drive where it is currently located. - i.e., do not move or save any data to a personal device, a university device, or to a RRDS profile. - This includes any data manipulation or analysis! (e.g., .csv files, Excel files, R scripts, etc.). 1. If a member is connected to the RRDS, they MUST lock the device whenever they are not seated at the computer. - Even if you’re getting up for just a minute, the computer must be locked if it has access to ABCD data. This ensures that only those with permission from the University and ABCD study are able to access data. - To do this, press “Ctrl + Alt + Delete” and select “Lock” from the given menu. 1. At the end of each work session, make sure that all work has been saved to the appropriate LSS drive and log out of the RRDS environment completely. 1. If these protocols are violated for any reason, whether accidentally or intentionally, reach out to Dr. Petersen immediately. - Violation of these security protocols may result in the individual losing data privileges.

3 Accessing ABCD Data

3.1 Step 1: Data Use Certificate

Work with Dr. Petersen to get added to the Data Use Certificate.

3.2 Step 2: Read (and Follow) the Lab’s Protocols for Handling ABCD Data

Read the lab’s System Security Plan (SSP) and Standard Operating Procedures (SOP) for handling ABCD data.

3.3 Step 3: Connect to the Research Remote Desktop Service (RRDS)

To access ABCD data, you need to access a RRDS.

  1. Create an RRDS Account: https://its.uiowa.edu/services/research-remote-desktop-service
  2. Connect to the RRDS: https://its.uiowa.edu/services/research-remote-desktop-service/connecting-research-remote-desktop-services-rrds
  3. Log in to the RRDS using your HawkID and password

If you run into issues connecting to the RRDS, please reach out to PBS IT Support () or Research Computing Support ()

3.4 Step 4: Connect to the ABCD LSS Server

Please contact Dr. Petersen to receive the network path for the ABCD Large Scale Storage server (LSS).

Mapping the Server on Windows: Windows Explorer -> This PC -> Computer Tab -> Map Network Drive button: \\server path

Mapping the Server on MacOS: Finder -> Go menu -> Connect to Server: smb://iowa\hawkid:*@server path

3.5 Access Management

[XXX]

Dr. Petersen can grant or revoke access to the share, or give other people roles if they are to manage the share using the Access Management tool: https://iam.uiowa.edu/access

A few notes:

  • When granting someone Read/Write or Read Only permissions and search for their name or ID, you may see both a HealthcareID and HawkID listed, select their HawkID.
  • Changes take about an hour to propagate through Argon and will not be reflected in existing sessions.
  • Changes are immediately reflected for SMB connections, however, users may have to remap/remount the volume or log out then back in for Windows/MacOS to be happy.

4 LSS Structure

The LSS should not be accessed on your local computer. The LSS should only be accessed through the RRDS. The main folder within the LSS is: ABCD Study

4.1 Analyses Projects

Analyses Projects > PetersenLab contains user folders for anyone working on projects with the ABCD data.

  1. Create a folder with your HawkID as the folder name
  2. Create a subfolder for your specific project
  3. Follow Petersen Lab template for structuring your project folder

4.2 Data

The folder Data > Version 6.0 contains tabulated ABCD data.

Imaging data, wearables data, and concatenated data are available for download here

  • [XXX] need instructions for accessing this
  • NOTE: The file sizes for these data exceed the capacity of our LSS

01-Raw contains the raw ABCD data files that should not be altered.

02-Processed contains scored measures and other cleaned data for universal use.

4.3 File types

  • JSON files: data dictionary/codebook files
  • Parquet files: columnar structured data (efficient for storage, can be used with the arrow package in R)
  • TSV files: tab-separated value data files

4.4 Available Measures

[XXX] Add measures currently downloaded

5 Version Control

[XXX] TBD

---
title: "ABCD Data"
---

```{r setup, include = FALSE}
knitr::opts_chunk$set(
  echo = TRUE,
  error = TRUE,
  comment = "")
```

# ABCD Data {#abcddata}

The [Adolescent Brain Cognitive Development (ABCD) Study](https://abcdstudy.org/) is the largest long-term study of brain development and child health in the United States.
This study explores how childhood experiences (such as sports, videogames, social media, unhealthy sleep patterns, and smoking) interact with each other and with a child’s changing biology to affect brain development and social, behavioral, academic, health, and other outcomes.
The ABCD study follows a cohort of over 10,000 children from pre-adolescence into adulthood.

# Data Security Protocols

All members using data from the ABCD study must abide by the following security protocols to ensure data security and participant confidentiality. 
  1. Only individuals approved by Dr. Petersen and who are added to the Data Use Certificate are allowed access to this data. 
  1. Members accessing this data <u><b>MUST</u></b> use the University of Iowa Research Remote Desktop Service (RRDS) when viewing or working with any data from the ABCD Study. 
  Further, this <u>must be done on a University of Iowa computer</u>, unless given direct permission by Dr. Petersen.
  1. Data <b><u>CANNOT</b></u> be moved from the LSS drive where it is currently located. 
     - i.e., do not move or save any data to a personal device, a university device, or to a RRDS profile.
     - This includes any data manipulation or analysis! (e.g., .csv files, Excel files, R scripts, etc.).
  1. If a member is connected to the RRDS, they <b><u>MUST</b></u> lock the device whenever they are not seated at the computer. 
      - Even if you're getting up for just a minute, the computer must be locked if it has access to ABCD data. 
      This ensures that only those with permission from the University and ABCD study are able to access data. 
        - To do this, press "Ctrl + Alt + Delete" and select "Lock" from the given menu. 
  1. At the end of each work session, make sure that all work has been saved to the appropriate LSS drive and log out of the RRDS environment completely. 
  1. If these protocols are violated for any reason, whether accidentally or intentionally, <u><b> reach out to Dr. Petersen immediately</b></u>.
     - Violation of these security protocols may result in the individual losing data privileges. 
    


# Accessing ABCD Data

## Step 1: Data Use Certificate

Work with Dr. Petersen to get added to the Data Use Certificate.

## Step 2: Read (and Follow) the Lab's Protocols for Handling ABCD Data

Read the lab's System Security Plan (SSP) and Standard Operating Procedures (SOP) for handling ABCD data.

## Step 3: Connect to the Research Remote Desktop Service (RRDS)

To access ABCD data, you need to access a RRDS.

1. Create an RRDS Account: https://its.uiowa.edu/services/research-remote-desktop-service 
1. Connect to the RRDS: https://its.uiowa.edu/services/research-remote-desktop-service/connecting-research-remote-desktop-services-rrds
    - Instructions for Windows: https://its.uiowa.edu/services/research-remote-desktop-service/connecting-rrds-using-windows-pc
    - Instructions for Mac: https://its.uiowa.edu/services/research-remote-desktop-service/connecting-rrds-using-mac
1. Log in to the RRDS using your HawkID and password

If you run into issues connecting to the RRDS, please reach out to PBS IT Support (PBS-help@uiowa.edu) or Research Computing Support (research-computing@uiowa.edu) 

## Step 4: Connect to the ABCD LSS Server

Please contact Dr. Petersen to receive the network path for the ABCD Large Scale Storage server (LSS).

<u>Mapping the Server on Windows:</u> Windows Explorer -> This PC -> Computer Tab -> Map Network Drive button: `\\server path`

<u>Mapping the Server on MacOS:</u> Finder -> Go menu -> Connect to Server: smb://iowa\hawkid:`*@server path` 

## Access Management

[XXX]

Dr. Petersen can grant or revoke access to the share, or give other people roles if they are to manage the share using the Access Management tool: https://iam.uiowa.edu/access

- Instructions for granting or revoking access: https://its.uiowa.edu/support/article/118771
- Delegate management of share access: https://its.uiowa.edu/support/article/119191

A few notes:

- When granting someone Read/Write or Read Only permissions and search for their name or ID, you may see both a HealthcareID and HawkID listed, <mark>select their HawkID</mark>.
- Changes take about an hour to propagate through Argon and will not be reflected in existing sessions.
- Changes are immediately reflected for SMB connections, however, users may have to remap/remount the volume or log out then back in for Windows/MacOS to be happy.

# LSS Structure

The LSS should not be accessed on your local computer. 
The LSS should **only** be accessed through the RRDS.
The main folder within the LSS is: `ABCD Study`

## Analyses Projects

`Analyses Projects > PetersenLab` contains user folders for anyone working on projects with the ABCD data.

  1. Create a folder with your HawkID as the folder name
  1. Create a subfolder for your specific project
  1. Follow [Petersen Lab template](https://research-git.uiowa.edu/PetersenLab/Template) for structuring your project folder

## Data

The folder `Data > Version 6.0` contains tabulated ABCD data.

Imaging data, wearables data, and concatenated data are available for download [here](https://nbdc-datashare.lassoinformatics.com/)

- [XXX] need instructions for accessing this
- NOTE: The file sizes for these data exceed the capacity of our LSS

`01-Raw` contains the raw ABCD data files that should not be altered.

`02-Processed` contains scored measures and other cleaned data for universal use.

## File types

- JSON files: data dictionary/codebook files
- Parquet files: columnar structured data (efficient for storage, can be used with the `arrow` package in R)
- TSV files: tab-separated value data files

## Available Measures

[XXX] Add measures currently downloaded

# Version Control

[XXX] TBD





Developmental Psychopathology Lab