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Create watercolor plot to visualize weighted regression.

Usage

vwReg(
  formula,
  data,
  title = "",
  B = 1000,
  shade = TRUE,
  shade.alpha = 0.1,
  spag = FALSE,
  spag.color = "darkblue",
  mweight = TRUE,
  show.lm = FALSE,
  show.median = TRUE,
  median.col = "white",
  shape = 21,
  show.CI = FALSE,
  method = loess,
  bw = FALSE,
  slices = 200,
  palette = colorRampPalette(c("#FFEDA0", "#DD0000"), bias = 2)(20),
  ylim = NULL,
  quantize = "continuous",
  add = FALSE,
  ...
)

Arguments

formula

regression model.

data

dataset.

title

plot title.

B

number of bootstrapped smoothers.

shade

whether to plot the shaded confidence region.

shade.alpha

whether to fade out the confidence interval shading at the edges (by reducing alpha; 0 = no alpha decrease, 0.1 = medium alpha decrease, 0.5 = strong alpha decrease).

spag

whether to plot spaghetti lines.

spag.color

the fitting function for the spaghettis; default: loess.

mweight

logical indicating whether to make the median smoother visually weighted.

show.lm

logical indicating whether to plot the linear regression line.

show.median

logical indicating whether to plot the median smoother.

median.col

color of the median smoother.

shape

shape of points.

show.CI

logical indicating whether to plot the 95% confidence interval limits.

method

color of spaghetti lines.

bw

logical indicating whether to use a b&w palette; default: TRUE.

slices

number of slices in x and y direction for the shaded region. Higher numbers make a smoother plot, but takes longer to draw. I would not set slices to more than 500.

palette

provide a custom color palette for the watercolors.

ylim

restrict range of the watercoloring.

quantize

either continuous, or SD. In the latter case, we get three color regions for 1, 2, and 3 SD (an idea of John Mashey).

add

if add == FALSE, a new ggplot is returned. If add == TRUE, only the elements are returned, which can be added to an existing ggplot (with the + operator).

...

further parameters passed to the fitting function, in the case of loess, for example, span = .9, or family = "symmetric".

Value

plot

Details

Creates a watercolor plot to visualize weighted regression.

Examples

# \donttest{
# Prepare Data
data("mtcars")
df <- data.frame(x = mtcars$hp, y = mtcars$mpg)

## Visually Weighted Regression

# Default
vwReg(y ~ x, df)
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...


# Shade
vwReg(y ~ x, df, shade = TRUE, show.lm = TRUE, show.CI = TRUE,
quantize = "continuous")
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'

vwReg(y ~ x, df, shade = TRUE, show.lm = TRUE, show.CI = TRUE,
quantize = "SD")
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'


# Spaghetti
vwReg(y ~ x, df, shade = FALSE, spag = TRUE, show.lm = TRUE, show.CI = TRUE)
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'
#> Warning: Removed 21579 rows containing missing values or values outside the scale range
#> (`geom_path()`).

vwReg(y ~ x, df, shade = FALSE, spag = TRUE)
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...
#> Warning: Removed 21838 rows containing missing values or values outside the scale range
#> (`geom_path()`).


# Black/white
vwReg(y ~ x, df, shade = TRUE, spag = FALSE, show.lm = TRUE, show.CI = TRUE,
bw = TRUE, quantize = "continuous")
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'

vwReg(y ~ x, df, shade = TRUE, spag = FALSE, show.lm = TRUE, show.CI = TRUE,
bw = TRUE, quantize = "SD")
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'

vwReg(y ~ x, df, shade = FALSE, spag = TRUE, show.lm = TRUE, show.CI = TRUE,
bw = TRUE, quantize = "SD")
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...
#> `geom_smooth()` using formula = 'y ~ x'
#> Warning: Removed 23444 rows containing missing values or values outside the scale range
#> (`geom_path()`).


# Change the bootstrap smoothing
vwReg(y ~ x, df, family = "symmetric") # use an M-estimator for
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

# bootstrap smoothers. Usually yields wider confidence intervals
vwReg(y ~ x, df, span = 1.7) # increase the span of the smoothers
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, span = 0.5) # decrease the span of the smoothers
#> Computing boostrapped smoothers ...
#> Warning: pseudoinverse used at 175
#> Warning: neighborhood radius 25
#> Warning: reciprocal condition number  1.1502e-16
#> Warning: pseudoinverse used at 175
#> Warning: neighborhood radius 25
#> Warning: reciprocal condition number  1.5592e-16
#> Warning: There are other near singularities as well. 900
#> Warning: pseudoinverse used at 123
#> Warning: neighborhood radius 27
#> Warning: reciprocal condition number  1.1268e-16
#> Warning: pseudoinverse used at 109
#> Warning: neighborhood radius 14
#> Warning: reciprocal condition number  0
#> Warning: pseudoinverse used at 113
#> Warning: neighborhood radius 10
#> Warning: reciprocal condition number  5.9634e-17
#> Warning: There are other near singularities as well. 169
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...


# Change the color scheme
vwReg(y ~ x, df, palette = viridisLite::viridis(4)) # viridis
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, palette = viridisLite::magma(4)) # magma
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, palette = RColorBrewer::brewer.pal(9, "YlGnBu")) # change the
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

# color scheme, using a predefined ColorBrewer palette. You can see all
# available palettes by using this command:
# `library(RColorBrewer); display.brewer.all()`
vwReg(y ~ x, df, palette = grDevices::colorRampPalette(c("white","yellow",
"green","red"))(20)) # use a custom-made palette
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, palette = grDevices::colorRampPalette(c("white","yellow",
"green","red"), bias = 3)(20)) # use a custom-made palette, with the
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

# parameter bias you can shift the color ramp to the “higher” colors
vwReg(y ~ x, df, bw = TRUE) # black and white version
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, shade.alpha = 0, palette = grDevices::colorRampPalette(
c("black","grey30","white"), bias = 4)(20)) # Milky-Way Plot
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, shade.alpha = 0, slices = 400, palette =
grDevices::colorRampPalette(c("black","green","yellow","red"),
bias = 5)(20), family = "symmetric") # Northern Light Plot/ fMRI plot
#> Computing boostrapped smoothers ...
#> Computing density estimates for each vertical cut ...
#> 
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#> Build ggplot figure ...

vwReg(y ~ x, df, quantize = "SD") # 1-2-3-SD plot
#> Computing boostrapped smoothers ...
#> Build ggplot figure ...

# }




Developmental Psychopathology Lab